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A simple hidden Markov model. A two-state hidden Markov model (HMM) describing DNA sequence with a heterogeneous base composition is shown in the following figure:
A simple hidden Markov model. A two-state hidden Markov model (HMM) describing DNA sequence with a heterogeneous base composition is shown in the following figure: (a) State 1 generates AT-rich sequence, and state 2 generates CG-rich sequence. State transitions and their associated probabilities are indicated by arrows, and symbol emission probabilities for A,C,G and T for each state are indicated below the states. The initial probabilities of state 1 and 2 are 0.55 and 0.45 respectively. Evaluate the probability of an observed sequence "ATCG" in a human DNA-profile using Forward algorithm
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