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Consider the sequence alignment problem over a four-letter alphabet {z 1 ,z 2 ,z 3 ,z 4 }, with a given gap cost and given

Consider the sequence alignment problem over a four-letter alphabet {z1,z2,z3,z4}, with a given gap cost and given mismatch costs. Assume that each of these parameters is a positive integer.

Suppose you are given two strings A = a1a2...am and B = b1b2...bn and a proposed alignment between them. Give an O(mn) algorithm to decide whether this alignment is the unique minimum-cost alignment between A and B. Please give explanation.

This is problem 6.18 from Algorithm Design by John Kleinberg, Eva Tardos.

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