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Do the following using R statistical tool please Q-3 A) Read csv file gene.csv (see below for file) and draw a heatmap. (Hint: reading file
Do the following using R statistical tool please Q-3 A) Read csv file gene.csv (see below for file) and draw a heatmap. (Hint: reading file use row.names = 1 and Converting data.frame to numeric matrix use function as.matrix or data.matrix) B) By using ggplot and preloaded midwest data. By limit your axis xlim=c(0,0.1), ylim=c(0, 500000) Plot plot area vs popadults and color points by states with size = 2. (refer tutorial: http://r-statistics.co/Complete-Ggplot2-Tutorial-Part1-With-R-Code.html)
Gene file
obs1 | obs2 | obs3 | obs4 | obs5 | obs6 | obs7 | obs8 | obs9 | obs10 | obs11 | |
Gene1 | 0.62 | 0.75 | 0.34 | 0.33 | 0.8 | 0.5 | 0.72 | 0.17 | 1 | 0.81 | 0.51 |
Gene2 | 0.62 | 0.75 | 0.34 | 0.33 | 0.8 | 0.54 | 0.74 | 0.17 | 1 | 0.81 | 0.51 |
Gene3 | 0.67 | 0.51 | 0.23 | 0.28 | 0.79 | 0.44 | 0.81 | 1 | 1 | 0.81 | 0.14 |
Gene4 | 0.63 | 0.75 | 0.55 | 0.33 | 0.64 | 0.6 | 0.85 | 1 | 0.23 | 0.61 | 0.14 |
Gene5 | 0.55 | 1 | 0.76 | 0.52 | 0.65 | 0.64 | 0.74 | 0.17 | 0.23 | 0.61 | 0.26 |
Gene6 | 0.54 | 0.75 | 0.48 | 0.31 | 0.57 | 0.65 | 0.88 | 1 | 0.23 | 0.61 | 0.14 |
Gene7 | 0.42 | 1 | 0.76 | 0.73 | 0.66 | 0.67 | 0.69 | 0.17 | 0.23 | 0.61 | 0.51 |
Gene8 | 0.72 | 0.51 | 0.31 | 0.19 | 0.76 | 0.6 | 0.87 | 1 | 0.23 | 0.81 | 0.26 |
Gene9 | 0.67 | 0.51 | 0.3 | 0.28 | 0.8 | 0.59 | 1 | 1 | 0.23 | 0.81 | 0.26 |
Gene10 | 0.57 | 0.75 | 0.36 | 0.37 | 0.8 | 0.64 | 0.8 | 1 | 0.23 | 0.81 | 0.51 |
Gene11 | 0.53 | 0.75 | 0.36 | 0.37 | 0.8 | 0.64 | 0.83 | 1 | 0.23 | 0.81 | 0.51 |
Gene12 | 0.49 | 1 | 0.58 | 0.54 | 0.63 | 0.76 | 0.76 | 0.17 | 0.23 | 0.61 | 0.39 |
Gene13 | 0.51 | 1 | 0.58 | 0.54 | 0.63 | 0.7 | 0.77 | 0.17 | 0.23 | 0.61 | 0.39 |
Gene14 | 0.45 | 1 | 0.58 | 0.54 | 0.63 | 0.71 | 0.79 | 0.17 | 0.23 | 0.61 | 0.39 |
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