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First-order approximation of Michaelis-Menten kinetics Consider the four-step reaction chain shown below. Here the label v i is the reaction rate ; it is not

First-order approximation of Michaelis-Menten kinetics

Consider the four-step reaction chain shown below. Here the label vi is the reaction rate; it is not a mass action rate constant. So, for example d/dt s2(t) = v1 v2. (This dt is the conventional notation when labeling the rates of enzyme-catalyzed reactions. It is unfortunately the same convention that's used for mass-action rate constants. We use the context and the variable name (v vs. k) to distinguish which case we're considering.)

Suppose the rate v0 is fixed and presume the other rates are given by Michaelis-Menten kinetics, with

(a) Simulate the system from initial conditions (in mM) (s1 , s2 , s3 ) = (0.3, 0.2, 0.1) and (6, 4, 4).

(b) Construct an approximate model in which the rates of reactions 1, 2, and 3 are replaced by mass action rate laws: vi = kisi. For i = 1, 2, 3, choose rate constants ki so that the mass action rate is the linearization of the corresponding Michaelis- Menten rate law, centered at si = 0. This is called the first-order approximation for the Michaelis-Menten rate.

(c) Simulate your simpler (mass-action based) model from the two sets of initial conditions in part (a). Explain why the approximation is better in one case than the other.

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