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I have a dataset containing Newt presence - absence variable ( 0 - 1 ) , fish ( which are the newt main predator )
I have a dataset containing Newt presenceabsence variable fish which are the newt main predator presenceabsence variable and a list of continuous variables such as many compounds and elements compounds known to lead to eutrophication, some ions, some heavymetals and some categorical variables such as water clarity, conductivity, alkalinity. The study aims to understand which of these variables is considered a pollutant, if the pollutant affect the newt's presence in these ponds and if the fish presence impacts the newt's presence. I found correlation between a lot of these variables. so did a PCA to decrease multicollinearity. And with a glm I found that the next variables are linked to pollution in ponds that affect negatively the newt's presence negatively : alkalinity, water clarity class, NPOC, As Cu Cd Be BrO The final question is : Is a negative effect of fish on newt occurrence stronger in polluted ponds than in less polluted ponds?" i used a Mixed model GLMER do you think it's the best model for this questiin? could you give me the exact code? with this model i found out that it has no singificance however I have a problem: i want to do a scatterplot where on the X axis i put waterclarity gradient, and on the plot we see the points corresponding to the Fish presence and others corresponding to the newt's presence using different colors to differentiate the variables on this scatter plot i would like to draw a line of best fit for each of the variables, the fish presence and the newt presence. could you help me with the code to do this scatterplot. i also question if i should trasform my presenceabsence data newt and fish or standardize it to do this scatterplot?
I have a dataset containing Newt presenceabsence variable fish which are the newt main predator presenceabsence variable and a list of continuous variables such as many compounds and elements compounds known to lead to eutrophication, some ions, some heavymetals and some categorical variables such as water clarity, conductivity, alkalinity.
The study aims to understand which of these variables is considered a pollutant, if the pollutant affect the newt's presence in these ponds and if the fish presence impacts the newt's presence. I found correlation between a lot of these variables. so did a PCA to decrease multicollinearity. And with a glm I found that the next variables are linked to pollution in ponds that affect negatively the newt's presence negatively : alkalinity, water clarity class, NPOC, As Cu Cd Be BrO
The final question is : Is a negative effect of fish on newt occurrence stronger in polluted ponds than in less polluted ponds?" i used a Mixed model GLMER do you think it's the best model for this questiin? could you give me the exact code? with this model i found out that it has no singificance however I have a problem: i want to do a scatterplot where on the X axis i put waterclarity gradient, and on the plot we see the points corresponding to the Fish presence and others corresponding to the newt's presence using different colors to differentiate the variables on this scatter plot i would like to draw a line of best fit for each of the variables, the fish presence and the newt presence. could you help me with the code to do this scatterplot. i also question if i should trasform my presenceabsence data newt and fish or standardize it to do this scatterplot?
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