Answered step by step
Verified Expert Solution
Question
1 Approved Answer
Mitogen-activated protein kinase 6 (MAPK6) is an enzyme that is a member of the Ser/Thr protein kinase family. MAPK6, along with other MAP kinases, are
Mitogen-activated protein kinase 6 (MAPK6) is an enzyme that is a member of the Ser/Thr protein kinase family. MAPK6, along with other MAP kinases, are extracellular signal-regulated kinases, which are activated through protein phosphorylation. MAPK6 is known to contain one protein kinase domain (Pkinase), located at the N-terminus. This Pkinase domain is a linear motif binding (LMB) domain, and is known to bind the following short linear motifs (SLiMs); Write a Python script that integrates information about MAPK6's interaction partners, their sequences, and the known motifs that the Pkinase binds, to determine how many of MAPK6's interactions are mediated by a LMP domain-motif interaction. The file HW 7.2_uniprot_proteins.fasta (available on blackboard) is a fasta file that contains proteins; that are known to interact with MAPK6. Your code should print: (1) the Uniprot ID of the binding partner; (2) the motif found in the binding partner, and, (3) the location of the motif in the binding partner's sequence. There may be more than one motif within one protein. There may also be no motifs in a protein. Mitogen-activated protein kinase 6 (MAPK6) is an enzyme that is a member of the Ser/Thr protein kinase family. MAPK6, along with other MAP kinases, are extracellular signal-regulated kinases, which are activated through protein phosphorylation. MAPK6 is known to contain one protein kinase domain (Pkinase), located at the N-terminus. This Pkinase domain is a linear motif binding (LMB) domain, and is known to bind the following short linear motifs (SLiMs); Write a Python script that integrates information about MAPK6's interaction partners, their sequences, and the known motifs that the Pkinase binds, to determine how many of MAPK6's interactions are mediated by a LMP domain-motif interaction. The file HW 7.2_uniprot_proteins.fasta (available on blackboard) is a fasta file that contains proteins; that are known to interact with MAPK6. Your code should print: (1) the Uniprot ID of the binding partner; (2) the motif found in the binding partner, and, (3) the location of the motif in the binding partner's sequence. There may be more than one motif within one protein. There may also be no motifs in a protein
Step by Step Solution
There are 3 Steps involved in it
Step: 1
Get Instant Access to Expert-Tailored Solutions
See step-by-step solutions with expert insights and AI powered tools for academic success
Step: 2
Step: 3
Ace Your Homework with AI
Get the answers you need in no time with our AI-driven, step-by-step assistance
Get Started