Table 5.1: Polymorphic Sites from Data Set A Table 5.2: Polymorphis Sites from Data Set B 0123456789 0123456789 ATAAAATAAA TAAAATAAAA seq2 .. .A. ... 0123456789 012345678901234567890 seqo TAAAAATATA ATAAAAAATA AAAAAAAAAA A seqi A.T......................... A...T........T....A. ......T... seq3 A..............T.TA. seq4 seq5 seq6 seq7 A......... seq8 A.....A.A. ..... seq9 A............ seq10 seq11 ....T. seq12 .A....... seq13 A............ A............ A.....A.A..A......AT .... seq16 A..... A.AT TA......A.......T... seq17 A.....A.A..A...TT.A. ...TT...T. seq18 A. ....A.A. A...T..A........... seq19 A....TA.A..A................. In addition to the 31 polymorphic sites, there are 19 fixed sites. Mismatch dist: 1 4 11 27 33 33 28 26 12 6 6 3 : seqo seqi seq2 seq3 seq4 seq5 seq6 seq7 seq8 seq9 seq10 seqi1 seq12 seq13 seq14 seq15 seq16 seq17 seq18 T.T. TT.TT A.T.....T T.T.TT.TT A.T.... .A....AT.T A. ...A.... .A....AT.T A....A. .A....AT.T A....A. .A....AT.T A....A. .A... AT.T A....A. .A... .A.T..... E EEEEEEE . . . seq14 seq15 .HEHE .1.. . TA....A. .A.T. .A.T.....TA....AT... .A.T.....TA....AT... . seq19 In addition to the 20 polymorphic sites, there are 30 fixed sites. Mismatch dist: 25 12 3 25 27 30 15 12 9 39 18 0 0 Exercise 5.15. Use these results to figure out which data set came from an expanded population and which came from a stationary population. Table 5.1: Polymorphic Sites from Data Set A Table 5.2: Polymorphis Sites from Data Set B 0123456789 0123456789 ATAAAATAAA TAAAATAAAA seq2 .. .A. ... 0123456789 012345678901234567890 seqo TAAAAATATA ATAAAAAATA AAAAAAAAAA A seqi A.T......................... A...T........T....A. ......T... seq3 A..............T.TA. seq4 seq5 seq6 seq7 A......... seq8 A.....A.A. ..... seq9 A............ seq10 seq11 ....T. seq12 .A....... seq13 A............ A............ A.....A.A..A......AT .... seq16 A..... A.AT TA......A.......T... seq17 A.....A.A..A...TT.A. ...TT...T. seq18 A. ....A.A. A...T..A........... seq19 A....TA.A..A................. In addition to the 31 polymorphic sites, there are 19 fixed sites. Mismatch dist: 1 4 11 27 33 33 28 26 12 6 6 3 : seqo seqi seq2 seq3 seq4 seq5 seq6 seq7 seq8 seq9 seq10 seqi1 seq12 seq13 seq14 seq15 seq16 seq17 seq18 T.T. TT.TT A.T.....T T.T.TT.TT A.T.... .A....AT.T A. ...A.... .A....AT.T A....A. .A....AT.T A....A. .A....AT.T A....A. .A... AT.T A....A. .A... .A.T..... E EEEEEEE . . . seq14 seq15 .HEHE .1.. . TA....A. .A.T. .A.T.....TA....AT... .A.T.....TA....AT... . seq19 In addition to the 20 polymorphic sites, there are 30 fixed sites. Mismatch dist: 25 12 3 25 27 30 15 12 9 39 18 0 0 Exercise 5.15. Use these results to figure out which data set came from an expanded population and which came from a stationary population
