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The catalytic mechanism of a new orotidin - 5 ' - monophosphate ( OMP ) decarboxylase was investigated. Based on the structure of the enzyme

The catalytic mechanism of a new orotidin-5'-monophosphate (OMP) decarboxylase was
investigated. Based on the structure of the enzyme and the high sequence homology to OMP
decarboxylase from yeast (Saccharomyces cerevisiae, ScOMPDC), Ser 153 and Gln 214 were
suggested to play important roles in the catalysis. The importance of these residues was
evaluated by making the corresponding alanine variants. After a few weeks work pure
preparations of the mutants S153A and Q214A were achieved and the following experiments
were performed. The initial reaction rates were measured at different concentration of
orotidin-5'-monophosphate in 10mM MOPS, pH 7,1 at 25C(table below). The kinetic
constants kcat and KM of the wild-type enzyme were known from earlier experiments to be 15
s-1 and 1,7M, respectively.
The reaction rates were measured in a spectrophotometer at 279nm by following the
disappearance of the substrate (substrate- product ()=2400M-1cm-1). In a total volume of 1,0
ml the cuvette reaction mixtures contained the following volumes of the enzyme stock
solutions: 50l of the S153A variant and 15l of the Q214A variant, respectively. The
molecular weight of the wild-type enzyme was 64320gmol-1. The enzyme stock solutions
had the following concentrations: S153A 65M; Q214A 0,72M. Cuvettes with a light path
of 10mm were used.
-Calculate GES,GES# and Gkcat and make energy-profile reaction-coordinate diagrams for
wild-type and mutant enzymes.
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