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The graph shows the same three short sequences aligned in two different ways. Score each alignment, suppose you reward a match with 2 points, penalize
The graph shows the same three short sequences aligned in two different ways. Score each alignment, suppose you reward a match with 2 points, penalize a mismatch with -3 and a gap with -5. what is the score for alignment (1)
What is the score for alignment (2)?
Which alignment is better, 1, 2, or the same?
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