Question
Two-transcription factor binding site sequences were identified and aligned by collaborators of yours. The sequences are: Database GCTATTGCACG-- Query --TAG---ATGGC And that we have the
Two-transcription factor binding site sequences were identified and aligned by collaborators of yours. The sequences are:
Database GCTATTGCACG--
Query --TAG---ATGGC
And that we have the following scoring function:
Match(m): +1 Mismatch(x): -3 Gap Open(o): -5 Gap Extend(e): -2
A) Assuming this is a global alignment, label each pair of bases in the alignment below by the characters (m, x, o, e), if any, that describe the pairs contribution to the alignment score. What is the score of the alignment, assuming it is global?
B) Assuming this is a local alignment, label each pair of bases in the alignment below by the character (m,x,o,e) if any that describes that pairs contribution to the alignment score. What is the score of the alignment, assuming it is local?
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