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Answer the following questions using the crystal structure of 4DKL from the Protein Data Bank website. ( https://www.rcsb.org/structure/4dkl) 1 GSHSLCPQTG SPSMVTAITI MALYSIVCVV GLFGNFLVMY VIVRYTKMKT HHHHHH

Answer the following questions using the crystal structure of 4DKL from the Protein Data Bank website. (https://www.rcsb.org/structure/4dkl)

1

GSHSLCPQTG SPSMVTAITI MALYSIVCVV GLFGNFLVMY VIVRYTKMKT

HHHHHH HHHHHHHHHH HHHHHHHHHH HHHH STT S

51

ATNIYIFNLA LADALATSTL PFQSVNYLMG TWPFGNILCK IVISIDYYNM

HHHHHHHHHH HHHHHHHHHH HHHHHHHHHS S S SHHHH HHHHHHHHHH

101

FTSIFTLCTM SVDRYIAVCH PVKALDFRTP RNAKIVNVCN WILSSAIGLP

HHHHHHHHHH HHHHHHHHH HHHHHHH H HHHHHHHHHH HHHHHHHHHH

151

VMFMATTKYR QGSIDCTLTF SHPTWYWENL LKICVFIFAF IMPVLIITVC

HHHSB EEE TTEEE B SSSHHHHHHH HHHHHHHHTT HHHHHHHHHH

201

YGLMILRLKS VRNIFEMLRI DEGLRLKIYK NTEGYYTIGI GHLLTKSPSL

HHHHHHH SHHHHHHH HH EEEEEE TTS EEEET TEEEESSS S

251

NAAKSELDKA IGRNTNGVIT KDEAEKLFNQ DVDAAVRGIL RNAKLKPVYD

HHHHHHHHHH HSS TTB HHHHHHHHHH HHHHHHHHHH T TTHHHHHH

301

SLDAVRRAAL INMVFQMGET GVAGFTNSLR MLQQKRWDEA AVNLAKSRWY

TS HHHHHHH HHHHHHH HH HHHT HHHHH HHHTT HHHH HHHHTTSHHH

351

NQTPNRAKRV ITTFRTGTWD AYEKDRNLRR ITRMVLVVVA VFIVCWTPIH

HHSHHHHHHH HHHHHHSSST TTS HHHHH HHHHHHHHHH HHHHHHHHHH

401

IYVIIKALIT IPETTFQTVS WHFCIALGYT NSCLNPVLYA FLDENFKRCF

HHHHHHHHS HHHHHH HHHHHHHHHH HHHHHHHHHH HH HHHHHHH

451

REFCIPTSST IEQP

HHHH

Use the amino acid sequence from above to answer the following questions.

Use a protein BLAST search to identify potential homologs in the organisms indicated in the table below. Include the gene name and E score for the top result.

Organism

gene name

E score

Saccharomyces cerevisiae

Drosophila melanogastor

Caenorhabditis elegans

What does the E score mean?

Using the E score as a rationale, which organism(s) has a clear homolog?

Which organism(s) does not have a clear homolog?

Based on what we discussed in class for each organism (unicellular vs metazoan), use no more than a few short sentences to speculate why one organism might encode the protein and another may not. Your reasoning should include reference to the type of protein and how it works in general terms.

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