Answered step by step
Verified Expert Solution
Link Copied!

Question

1 Approved Answer

Derive a tighter bound for the branch-and-bound strategy for the median string problem. Hint: Split an l -mer w into two parts, u and v

Derive a tighter bound for the branch-and-bound strategy for the median string problem. Hint: Split an l-mer w into two parts, u and v. Use totalDistance(u, DNA) + totalDistance(v, DNA) to bound totalDistance(w, DNA).

image text in transcribed

Above is the branch and bound strategy for the median string problem. I know that distance(u) + distance(v) BRANCHANDBOUNDMEDIANSEARCH(DNA,t, n, l) 2 bestDistanceoo 4 while i> 0 6 prefix nucleotide string corresponding to (s1, s2-.. , si optimisticDistance TOTALDISTANCE (prefix, DNA) if optimisticDistance > bestDistance 7 (s, i) BYPASS(si, 1, 4) 10 else (s, i) NEXTVERTEX(s, 2.1.4) else 12 13 14 15 16 17 18 return bestWord word nucleotide string corresponding to (s1, 82, . . s1) if TOTALDISTANCE(word, DNA) 0 6 prefix nucleotide string corresponding to (s1, s2-.. , si optimisticDistance TOTALDISTANCE (prefix, DNA) if optimisticDistance > bestDistance 7 (s, i) BYPASS(si, 1, 4) 10 else (s, i) NEXTVERTEX(s, 2.1.4) else 12 13 14 15 16 17 18 return bestWord word nucleotide string corresponding to (s1, 82, . . s1) if TOTALDISTANCE(word, DNA)

Step by Step Solution

There are 3 Steps involved in it

Step: 1

blur-text-image

Get Instant Access to Expert-Tailored Solutions

See step-by-step solutions with expert insights and AI powered tools for academic success

Step: 2

blur-text-image

Step: 3

blur-text-image

Ace Your Homework with AI

Get the answers you need in no time with our AI-driven, step-by-step assistance

Get Started

Recommended Textbook for

Readings In Database Systems

Authors: Michael Stonebraker

2nd Edition

0934613656, 9780934613651

More Books

Students also viewed these Databases questions

Question

=+2 Is the decision sustainable in the long run?

Answered: 1 week ago

Question

Describe Table Structures in RDMSs.

Answered: 1 week ago