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Draw a dipeptide with sequence: D-D. Make sure your acids are deprotonated and your bases are protonated. After energy minimization (OPLS-AA force field) calculate

Draw a dipeptide with sequence: D-D. Make sure your acids are deprotonated and your bases are protonated. After energy minimization (OPLS-AA force field) calculate the partial charges of the atoms using MNDO semi empirical method. Label the atoms by partial charge. Make a picture and insert it in this report 0.602 0.609 0.7890.789 52 0.603 0.808 0.808 0.546 347 306 0.816 181 3030 0.678 12 19521 885 0.023 0.007 017114 0.816 359 562 021 434 589 978 057 0.203 0.220 Discuss. Do you see a difference, why do you see these differences? Are there differences in values between the amino acids using different methods? How could this be?

Draw a dipeptide with sequence: D-D. Make sure your acids are deprotonated and your bases are protonated. After energy minimization (OPLS-AA force field) calculate the partial charges of the atoms using MNDO semi empirical method. Label the atoms by partial charge. Make a picture and insert it in this report. 0.808 0819 -0.017-0.023 -0.808 0.017114 0029 0.23078 0.220 0.306 -0.789 0519 0.562 -0.589 0726 -0.789 -0.182 0.10521 -0.065 -0.021 -0.816 6.885 -0.816 0.657 0.546 8.347 0.018 -8.885 0.181 0233535 0.609 0.312 0.359 10.057 D6 0.203 0.352 -0.602 10.00030 098044 -0.434 -0.007 -0.603 0.347 -0.678 Discuss. Do you see a difference, why do you see these differences? Are there differences in values between the amino acids using different methods? How could this be?

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