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From the output page, a pseudo - alignment in FASTA format can be downloaded. What can this file be used for? To see codon changes

From the output page, a pseudo-alignment in FASTA format can be downloaded. What can this file be used for?
To see codon changes
To get number of synonymous SNPs
To get an overview of the called SNPs
As input to other tree building algorithms
What is the database for MyDBFinder?
A single FASTA file containing one DNA sequence
A single FASTA file containing multiple DNA sequences
A single FASTA file containing multiple genes
All above
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