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Implement a stand-alone Python program to calculate N50 from the FASTA format contigs file. Usage: python myquast.py test_data/contigs_1.fasta -o quast_test_output (optinal for output directory)
Implement a stand-alone Python program to calculate N50 from the FASTA format contigs file.
Usage:
python myquast.py test_data/contigs_1.fasta \ -o quast_test_output (optinal for output directory) -h (showing usage)
Output:
report.txt
The report should include:
Number of contigs and total length of them.
Length of the largest contig.
N50 (length of a contig, such that all the contigs of at least the same length together cover at least 50% of the assembly).
Recommend you to use the BioPython library to read the FASTA format file, but you can implement the section by yourself.
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