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SCRIPT NEEDED! I have a total of 40 DIFFERENT text files with SNP data, each file containing 3 separate sites. I'm needing to create a
SCRIPT NEEDED!
I have a total of 40 DIFFERENT text files with SNP data, each file containing 3 separate sites. I'm needing to create a simple p-value filter script that measures the significance between ALL of these files. I will need to loop the script through sites/traits for the analyses. The column headers look like this:
Thanks in advance!
\( \begin{array}{lllll}\text { site } & \text { snp } & \text { snp_effect_3 } & \text { log10pval_3 } & \text { snp_effvar_3 } \\ 3 & 1 & -0.0001159179 & 0.2299163019 & 0.6751754646 \\ 3 & 2 & 5.498314 E-05 & 0.5516680194 & 0.3202549078 \\ 3 & 3 & -2.020212 E-05 & 0.0660607099 & 0.1176692761 \\ 3 & 4 & -0.0001030215 & 0.3412925682 & 0.6000594066 \\ 3 & 5 & -0.0001030215 & 0.3412925682 & 0.6000594066 \\ 3 & 6 & -0.0001030215 & 0.3412925682 & 0.6000594066\end{array} \)Step by Step Solution
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