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Use the given Query word ( TSKAA ) and the similarity scores for BLAST Questions from 2 8 - 3 1 . Similarity scores: TT

Use the given Query word (TSKAA) and the similarity scores for BLAST Questions from 28-31. Similarity scores: TT=13, TS= y, SS=9,SA=1,AA=7, AK=2, KK= x ,SK=-6. All the other similarity scores are negative. Threshold=15, per letter threshold=6 for k=2
28. What is the maximum integer score for TS similarity score y such that TT makes it to the seed list but SS does not make it to the seed list ?uff
A)5 B)8 C)4 D)10 E) none of the others
29. What is the maximum integer score for KK similarity score x such that SK makes it to the seed list but KA does not make it to the seed list ?uff
B)5 B)7 C)4 D)10 E) none of the others
30. If KK score is 6 and TS similarity score=3 What would the BLAST search give from the given database sequence TSSSSSTTKKKK?ufff
A) TS B) TSSS C) TTKK D) TKK E) none of the others
31. What is the maximum score of the matching sequence?
A)30 B)22 C)24 D)19 E) None of the others

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