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Using a gap penalty of d = - 5 and scoring matrix as below A C G T A 2 - 7 - 5 -

Using a gap penalty of d=-5 and scoring matrix as below
A C G T
A 2-7-5-7
C -72-7-5
G -5-72-7
T -7-5-72
And applying dynamic programming
1. to find the optimal global alignment of AATG and AGC (15 marks)
2. to find the optimal local alignment of AATG and AGC (15 marks)

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