Answered step by step
Verified Expert Solution
Link Copied!

Question

1 Approved Answer

using python Implement a software application that makes DNA patterns from DNA sequences of gene promoters. Compute the C+G% and the Kappa Index of Coincidence

using python

Implement a software application that makes DNA patterns from DNA sequences of gene promoters. Compute the C+G% and the Kappa Index of Coincidence values from each sliding window.

To ensure that the algorithm implementation works correctly, use the following steps:

1. Use the sequence: S=CGGACTGATCTATCTAAAAAAAAAAAAAAAAAAAAAAAAAAACGTAGCATCTATCGATCTATCTAGCGATCTATCTACTACG.

2. Use a sliding window of length 30b.

3. Build a function to process the CpG content. The value that the function must return is: CG = 29.27

4. Build a function to process the Index of Coincidence. The value that the function must return is: IC = 27.53

5. Plot the pattern on a chart.

6. Calculate the center of weight of the pattern.

7. Take the center of each pattern and plot it on a second chart.

8. Take the DNA sequence of a promoter and generate a pattern. Open PromKappa and see if your pattern is the same.

Step by Step Solution

There are 3 Steps involved in it

Step: 1

blur-text-image

Get Instant Access to Expert-Tailored Solutions

See step-by-step solutions with expert insights and AI powered tools for academic success

Step: 2

blur-text-image

Step: 3

blur-text-image

Ace Your Homework with AI

Get the answers you need in no time with our AI-driven, step-by-step assistance

Get Started

Recommended Textbook for

Oracle Solaris 11.2 System Administration (oracle Press)

Authors: Harry Foxwell

1st Edition

007184421X, 9780071844215

More Books

Students also viewed these Databases questions

Question

What are the basic financial decisions ?

Answered: 1 week ago

Question

What is meant by 'Wealth Maximization ' ?

Answered: 1 week ago

Question

What is the average transaction amount for Montana (MT)?

Answered: 1 week ago