Question
using python Implement a software application that makes DNA patterns from DNA sequences of gene promoters. Compute the C+G% and the Kappa Index of Coincidence
using python
Implement a software application that makes DNA patterns from DNA sequences of gene promoters. Compute the C+G% and the Kappa Index of Coincidence values from each sliding window.
To ensure that the algorithm implementation works correctly, use the following steps:
1. Use the sequence: S=CGGACTGATCTATCTAAAAAAAAAAAAAAAAAAAAAAAAAAACGTAGCATCTATCGATCTATCTAGCGATCTATCTACTACG.
2. Use a sliding window of length 30b.
3. Build a function to process the CpG content. The value that the function must return is: CG = 29.27
4. Build a function to process the Index of Coincidence. The value that the function must return is: IC = 27.53
5. Plot the pattern on a chart.
6. Calculate the center of weight of the pattern.
7. Take the center of each pattern and plot it on a second chart.
8. Take the DNA sequence of a promoter and generate a pattern. Open PromKappa and see if your pattern is the same.
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