Answered step by step
Verified Expert Solution
Question
1 Approved Answer
When a new gene is discovered, a standard approach to understanding its function is to look through a database of known genes and find close
When a new gene is discovered, a standard approach to understanding its function is to look through a database of known genes and find close matches. The closeness of two genes is measured by the extent to which they are aligned. To formalize this, think of a gene as being a long string over an alphabet
Consider two genes stringsATGCC and TACGCA. An alignment of and is a way of matching up these two strings by writing them in columns, for instance: Here the indicates a "gap". The characters of each string must appear in order, and each column must contain a character from at least one of the strings. The score of an alignment is specified by a scoring matrix of size where the extra row and column are to accommodate gaps. For instance the preceding alignment has the following score:
Give a dynamic programming algorithm that takes as input two strings dotsn and dotsm and a scoring matrix and returns the highest scoring alignment. Give the definition, Base case, solution and formula
Step by Step Solution
There are 3 Steps involved in it
Step: 1
Get Instant Access to Expert-Tailored Solutions
See step-by-step solutions with expert insights and AI powered tools for academic success
Step: 2
Step: 3
Ace Your Homework with AI
Get the answers you need in no time with our AI-driven, step-by-step assistance
Get Started