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When using BWA (check all that apply) the command 'bwa mem' is used to map reads in an indexed genome the command 'bwa map' is
When using BWA (check all that apply) the command 'bwa mem' is used to map reads in an indexed genome the command 'bwa map' is used to map reads in an indexed genome the command 'bwa index` is used to index a genome the command 'bwa quant' is used to quantify transcript expression
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