Question
CODING IN R STUDIO! How can I write a code that computes the number of genes in common for each pair of phenotypes and then
CODING IN R STUDIO!
How can I write a code that computes the number of genes in common for each pair of phenotypes and then store it in a matrix with dimensions N x N where N is the # of phenoypes in the matrix?
Example of data I am working with:
| A | B | C | D | E | F | G | H | I | J | K | L | M | N | |
| Gene1 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| Gene2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 |
| Gene3 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 |
| Gene4 | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 1 |
| Gene5 | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 |
| Gene6 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| Gene7 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 1 | 0 |
| Gene8 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| Gene9 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
'1' means that the gene has the phenotype, '0' means that the gene does not have it.
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Authors: Aaron Ploetz ,Tejaswi Malepati ,Nishant Neeraj
3rd Edition
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