Answered step by step
Verified Expert Solution
Link Copied!

Question

1 Approved Answer

why? DNA N-Gram Distribution (string scalar) In DNA analysis unique sequences of three bases need to be identified any point in the gene sequence. The

why?image text in transcribedimage text in transcribedimage text in transcribedimage text in transcribed

DNA N-Gram Distribution (string scalar) In DNA analysis unique sequences of three bases need to be identified any point in the gene sequence. The bases could be combinations of either T, C, A or G. Write a function nGramFrequency to identify the unique n-grams (n letter sequence) in a given string scalar stringin and the number of times an n-gram occurs. In addition to the input stringln, the number n speficies the length of the n-gram. The identified unique n-gram sequences should be sorted alphabetically. The outputs should be empty if i) there are no n-grams, ii) the input is not a string scalar, or ii) the length of the ngram is not a positive integer. Restriction: The nGramFrequency function should use the internal function extractBetween. For example >>S"AACTGAACG"; lengthnGram 3; >>uniquegrams, count] nGramFrequency (s,lengthnGram) uniquegrams- 1x6 string array "AAC" "ACG""ACT""CTG""GAA""TGA" countE 1 The unique 3-grams are "AAC" "ACG" "ACT" "CTG" "GAA" "TGA". The sequence AAC that appears twice, and all appear once >>s"AACTGAACG";lengthnGram-10; [uniquegrams, count] nGramFrequency(s,lengthnGram) uniquegrams- [l countE [l Your Function Save C Reset E MATLAB Documentation 1 function [uniqueGrams, countGrams] nGramFrequency(instring, lengthnGram) 3 uniqueGrams [1; 4 count-[]; 5 SinString: 6 if (isStringScalar(s) &&lengthnGram > 0 && lengthnGramstrlength(s)) uniquegramsstrings; countTemp-0; k 1; 2while( (i+lengthnGram-1)

Step by Step Solution

There are 3 Steps involved in it

Step: 1

blur-text-image

Get Instant Access to Expert-Tailored Solutions

See step-by-step solutions with expert insights and AI powered tools for academic success

Step: 2

blur-text-image

Step: 3

blur-text-image

Ace Your Homework with AI

Get the answers you need in no time with our AI-driven, step-by-step assistance

Get Started

Recommended Textbook for

More Books

Students also viewed these Databases questions

Question

RBAC binds roles with users and also associates roles with what?

Answered: 1 week ago